Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g hg38 -z /Data/DataBases/hg38/hg38_canonic.fa -p /Data/DataBases/hg38/hg38_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_hg38.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5099904/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  111,483,392
 Normal Paired: 110,070,471 (98.73%)
 Chimeric Paired: 5,125 (0.00%)
 Chimeric Ambiguous: 1,638 (0.00%)
 Unmapped: 1,406,158 (1.26%)
 Ligation Motif Present: 8,168 (0.01%)
Alignable (Normal+Chimeric Paired): 110,075,596 (98.74%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-29T14:21:32,797]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,091,072 (29.68%)
PCR Duplicates: 76,984,524 (69.05%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 34,512,874
Intra-fragment Reads: 19,076,509 (17.11% / 57.65%)
Below MAPQ Threshold: 2,617,731 (2.35% / 7.91%)
Hi-C Contacts: 11,396,832 (10.22% / 34.44%)
 Ligation Motif Present: 2,457  (0.00% / 0.01%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 3,664,726  (3.29% / 11.07%)
Intra-chromosomal: 7,732,106  (6.94% / 23.37%)
Short Range (<20Kb): 5,408,933  (4.85% / 16.35%)
Long Range (>20Kb): 2,323,077  (2.08% / 7.02%)